PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G08650.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 194aa    MW: 21668.2 Da    PI: 5.8155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G08650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.7e-1848552128
              NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      ++++++ yfF+ ++++     +++r+t sg+Wk tg++k++++    ++  + +k+ +vfy      +g++++ +kt+W+mheyrl
  OBART02G08650.1   4 YGSDHDRYFFTMAAREV----QTRRTTPSGFWKPTGTKKTIFVVageHEVPTAVKRRFVFYlghhqpSGSNNNNNKTSWIMHEYRL 85 
                      4567889*****99976....6899****************99865555569*********98888778999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.8641119IPR003441NAC domain
SuperFamilySSF1019411.16E-204119IPR003441NAC domain
PfamPF023654.2E-11985IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAMYGSDHDR YFFTMAAREV QTRRTTPSGF WKPTGTKKTI FVVAGEHEVP TAVKRRFVFY  60
LGHHQPSGSN NNNNKTSWIM HEYRLMNSPR AAVPLSSSVN RLPTDDLTEE MVLCRISNKD  120
LPKPPFIHNG LLQFSSVGLN GDGYNYLILD HLEPPAMEYP NVGIGNVDDA AAGTDDPGDL  180
DEEIDDSMQR NHGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankAP0040390.0AP004039.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1006_D05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.11e-138NAC domain-containing protein 48-like
TrEMBLA0A0D3F2F61e-144A0A0D3F2F6_9ORYZ; Uncharacterized protein
TrEMBLI1NYJ81e-143I1NYJ8_ORYGL; Uncharacterized protein
STRINGORGLA02G0080400.11e-144(Oryza glaberrima)
STRINGOBART02G08650.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-14NAC domain containing protein 25