PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G07450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 289aa MW: 31847.6 Da PI: 9.4189 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.4e-17 | 21 | 112 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++ l lp +fa+e +g+++e ++ +l r W+vk+ +g+ +l++GW +F++a+gL++gD +vF++dg f +v+v OBART02G07450.1 21 PGSSRTKLKLPDEFARELEGEERELRDAKLLVAGVgrrrrgRMWDVKV--VADDGGAYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TVTV 110 44556669**********88888777777654222334444*******..999999**************************998888..8888 PP E- CS B3 97 fr 98 f+ OBART02G07450.1 111 FD 112 87 PP | |||||||
2 | B3 | 51.2 | 2.3e-16 | 187 | 258 | 17 | 87 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +p +f e+hg+ +e +++ +grsW+v+l++ r +++r vl+ GW +F+ +ngL +gD++ F+ ++ OBART02G07450.1 187 NVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALRS 258 57999*****998665..455.45599*******998887777788************************96554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-18 | 12 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-20 | 12 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.143 | 13 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.56E-13 | 13 | 112 | No hit | No description |
SMART | SM01019 | 1.7E-12 | 15 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-14 | 22 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 145 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0019 | 148 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 188 | 283 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-14 | 188 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.44E-12 | 188 | 254 | No hit | No description |
Pfam | PF02362 | 1.4E-13 | 188 | 257 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR 60 GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA 120 YHDAAGSGSS SDDDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA 180 AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC 240 ADNGLAVGDT CFFRALRSAS SGAGDVDDGD GDHVLSVTVH KADGGDPLE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | RPRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628624.1 | 4e-95 | B3 domain-containing protein Os03g0212300 | ||||
Swissprot | Q10Q26 | 3e-96 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0D3F209 | 0.0 | A0A0D3F209_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G07450.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 4e-14 | B3 family protein |
Publications ? help Back to Top | |||
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