PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART02G05200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 201aa MW: 22231.8 Da PI: 7.6916 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.7 | 5.3e-28 | 1 | 52 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rW +eLH+rFv+av++LGG ++AtPk+i++lm+ kg++++hvkSHLQ+YR OBART02G05200.1 1 MRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRN 52 79*************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.415 | 1 | 55 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-7 | 1 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 1 | 53 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-21 | 1 | 52 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 6.99E-13 | 1 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MRWPEELHRR FVHAVRRLGG CHEATPKRIM QLMGAKGVSI SHVKSHLQMY RNSNNSSNVN 60 RRHPVTPQID WTTTAQQDEQ QRRQMSSFSF LATRTVPAAG IGSHSHQRPH RRQALHAGDD 120 DGCELTLSIS GGAAEESKDG GSSITDDDDE LLIQPPAPNI INDDGSTRHG HRHPFACSTQ 180 PPPPAAINLE LTISSPCCWL T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT831400 | 0.0 | CT831400.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624627.1 | 1e-148 | transcription factor HHO5 | ||||
TrEMBL | A0A0D3F172 | 1e-148 | A0A0D3F172_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NXM1 | 1e-147 | I1NXM1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0047700.1 | 1e-148 | (Oryza glaberrima) | ||||
STRING | OBART02G05200.1 | 1e-149 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19910 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14600.1 | 2e-17 | G2-like family protein |