PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G05020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 136aa MW: 15028 Da PI: 9.656 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.8 | 1.7e-43 | 6 | 136 | 1 | 120 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhP+d+elvv+yL k+++ + + ++ +vd++k+ePwdLp+ + + kewyf+ +d+kya+g+r+nrat+ OBART02G05020.2 6 LPPGFRFHPRDDELVVDYLSGKLRSGDggaA---SggggagagcptpTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGQRTNRATE 96 79**********************9996550...34455555666546999************7666789************************ PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd 120 sgyWkatgkd+e+++ kg+lvg++ktLvfy+grapkge+td OBART02G05020.2 97 SGYWKATGKDREITR-KGSLVGMRKTLVFYRGRAPKGERTD 136 **************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-45 | 3 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.714 | 6 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-19 | 7 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GDGGAASGGG GAGAGCPTPT LIDVDLNKCE 60 PWDLPEIACI GGKEWYFYNL KDRKYARGQR TNRATESGYW KATGKDREIT RKGSLVGMRK 120 TLVFYRGRAP KGERTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-41 | 2 | 136 | 11 | 132 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004863 | 1e-112 | AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17. | |||
GenBank | AP005804 | 1e-112 | AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21. | |||
GenBank | AP014958 | 1e-112 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624259.1 | 1e-95 | NAC domain-containing protein 21/22 isoform X2 | ||||
Refseq | XP_025878697.1 | 1e-95 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 2e-58 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | I1NXK5 | 5e-97 | I1NXK5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA02G0046100.1 | 8e-98 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 6e-60 | NAC domain containing protein 1 |