PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G04450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 319aa    MW: 34664.3 Da    PI: 10.1494
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G04450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.51.5e-561432802139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OBART02G04450.1 143 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 236
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OBART02G04450.1 237 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 280
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.7E-72130299IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.41E-75134319IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.0E-57143277IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAHSLMAVGP RRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRFSVGN  60
ATAAESQGQR CSASPASSPP PPVAQSVSGV LSQSLVSPFD PRDPRVTDLK DALWSGSLTF  120
QHALSTFAAD ENTSGRKFAS YTVFKGKAAL SMQPILPSFS KLESGGSRVN KNGSVMLTFF  180
PAVGQRKYDY SKKQLFALSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSVTPL  240
GNDSGYFLNI TVLNNLQKTT ERLSLPISKA EFTVMRTALS FALPHILGWD QALTNHQPSP  300
SPASKPRVER PHPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-711342968169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-711342968169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-711342968169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-711342968169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-156single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0343e-73WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0D3F0Y70.0A0A0D3F0Y7_9ORYZ; Uncharacterized protein
STRINGOBART02G04450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-73WHIRLY 2