PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART02G04420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 17118 Da PI: 4.7885 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.8e-17 | 23 | 68 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+ OBART02G04420.1 23 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAAS 68 6********.7*********83...36*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-19 | 23 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-16 | 23 | 69 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-11 | 23 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.465 | 23 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-13 | 23 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-22 | 23 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MRRARPPPAA AMAGVGVGEG EVRYRGVRRR PSGRYAAEIR DPAKKTPIWL GTFDSAEAAA 60 RAYDAAASTV ESWGVTVAAA AASAGALGLP PPRNGGSNPA ADEDCRSYCG SSSSVLCEDG 120 ASGAGDEAAA PRCSPLPFDL NLPASSPSAA AAAEADEMDW RCDTLLHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 12 | 97 | 3 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287559 | 1e-170 | AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence. | |||
GenBank | AP004843 | 1e-170 | AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11. | |||
GenBank | AP004871 | 1e-170 | AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03. | |||
GenBank | AP014958 | 1e-170 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623823.1 | 7e-77 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0D3F0Y3 | 1e-113 | A0A0D3F0Y3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G04420.1 | 1e-113 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |