PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G02910.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 306aa MW: 33195.6 Da PI: 6.6975

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G02910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.4e-29	66	116	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ OBART02G02910.1 66 EKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 116 899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	55	136	IPR003035	RWP-RK domain
Pfam	PF02042	8.4E-27	68	116	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-19	190	265	No hit	No description
SMART	SM00666	1.4E-17	198	294	IPR000270	PB1 domain
PROSITE profile	PS51745	16.197	198	294	IPR000270	PB1 domain
CDD	cd06407	5.81E-37	199	281	No hit	No description
Pfam	PF00564	1.4E-12	199	271	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-22	199	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MADGDQQLRH EMDDLGDDQR CSDEEDLQLL ENTNTGELNI HNEDQIRNED PTSQVGKNKT 60 RRGKSEKSVT LEELQKHFSG SLKDAARSLG VCPTTMKRIC RQHGIPRWPF RKISKVNRSL 120 DKMKRVMESV NCSPSPPVAM LMPARPALLL PPPPPPPRPC LSSTVGETSS HGSCQAPPPH 180 AKTALQKPPS WCSNGDGVVT IKASHRGDII RFRVPCSAGV TAVKAEVAKR LSLDAGAFDV 240 KYLDDDHEWV LLSCDADFQE CLDVVPALPS MSVTARSGSG AAAPVVVRLM VQEVADNIGS 300 SCASSD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005474	0.0	AP005474.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627710.1	0.0	protein NLP3-like
Swissprot	Q8RWY4	2e-56	NLP6_ARATH; Protein NLP6
TrEMBL	A0A0D3F0E0	0.0	A0A0D3F0E0_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YM05	0.0	A0A0D9YM05_9ORYZ; Uncharacterized protein
STRING	OGLUM02G02840.1	0.0	(Oryza glumipatula)
STRING	OBART02G02910.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	3e-31	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]