PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G02330.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 583aa    MW: 65542.9 Da    PI: 5.5369
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G02330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822115.39.6e-36112429142
           DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssf 119
                      +++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e+++  s+l+s+a+ +p++s++++++++++
  OBART02G02330.1   1 MLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDS 94 
                      79*********************************************998999**************99899********************** PP

           DUF822 120 pspssldsislasa.......asllpvlsv 142
                      +spsslds+ +a++        ++ +v+s 
  OBART02G02330.1  95 LSPSSLDSVVVADQsirnekyGNSDSVSSL 124
                      ***********9987766655444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.8E-331127IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.805.0E-172145578IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514452.23E-169145577IPR017853Glycoside hydrolase superfamily
PfamPF013732.5E-81170535IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50183197IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50204222IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50317339IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50390409IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50424440IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50441452IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50459482IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-50497519IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLSGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRASSQPLHP PTPQSPGIFH  60
VNSVETPSFT SVLNSYAIGT PLDSQASMLQ TDDSLSPSSL DSVVVADQSI RNEKYGNSDS  120
VSSLNCLENH QLTRASAALA GDYTRTPYIP VYASLPMGII NSHCQLIDPE GIRAELMHLK  180
SLNVDGVIVD CWWGIVEAWI PHKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGETGSGGV  240
SLPKWVMEIA QENQDVFFTD REGRRNMECL SWGIDKERVL RGRTGIEAYF DFMRSFHMEF  300
RNLTEEGLIS AIEIGLGVSG ELKYPSCPER MGWRYPGIGE FQCYDRYMQK NLRQAALSRG  360
HLFWARGPDN AGYYNSRPHE TGFFCDGGDY DSYYGRFFLN WYSGILIDHV DQVLSLATLA  420
FDGVETVVKI PSIYWWYRTA SHAAELTAGF YNPTNRDGYS PVFRMLKKHS VILKFVCYGP  480
EFTIQENNEA FADPEGLTWQ VMNAAWDHGL SISVESALPC LDGEMYSQIL DTAKPRHDPD  540
RHHVSFFAYR QLPSFLLQRD VCFSELGNFV KCMHGEATQI VEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12414857611444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D3F0720.0A0A0D3F072_9ORYZ; Beta-amylase
STRINGOBART02G02330.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]