PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G45730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 30991.3 Da PI: 7.1513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.4e-14 | 57 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v++lG ++W+ a+ g+ R++k+c++rw +yl OBART01G45730.1 57 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 104 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 110 | 155 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+ v+++++lG++ W++Ia+ m+ gRt++++k++w+++l OBART01G45730.1 110 RGRMSPEEERMVVQLHAKLGNR-WSRIAKSMP-GRTDNEIKNYWRTHL 155 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 25 | No hit | No description |
PROSITE profile | PS51294 | 12.982 | 52 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-27 | 56 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 56 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 57 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 58 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-8 | 59 | 104 | No hit | No description |
PROSITE profile | PS51294 | 26.873 | 105 | 159 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-18 | 109 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 110 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 112 | 157 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.87E-13 | 112 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVVAGKKQGR HSFSASSSSS SSSSCSVVQL GHHQRPQGED PLIGIKAAAA GGGIMRKGPW 60 TEQEDVQLVW FVRLLGERRW DFLAKVSGLQ RSGKSCRLRW VNYLHPGLKR GRMSPEEERM 120 VVQLHAKLGN RWSRIAKSMP GRTDNEIKNY WRTHLRKLKL KQQKQQQSDD HHNDDDDDDD 180 RNSSSSSSSS NSNSNLQQQP QPEDESSASG SLQAQHHEDQ HQLFLHPLWN DDIIVDVDCW 240 SSSTNVVAPP PMPASPLWDI DDAFFCSDYS LPLWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 57 | 157 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-26 | 57 | 157 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-26 | 57 | 157 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-26 | 54 | 157 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 54 | 157 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY398581 | 0.0 | AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621159.1 | 1e-145 | transcription factor MYB59 | ||||
TrEMBL | A0A0D3EZB3 | 0.0 | A0A0D3EZB3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G45730.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-56 | myb domain protein 59 |