PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G45510.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 408aa    MW: 44980.7 Da    PI: 4.6352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G45510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31160216258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h
  OBART01G45510.1 160 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 216
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.164154219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-29157217IPR003657WRKY domain
SuperFamilySSF1182903.53E-26158217IPR003657WRKY domain
SMARTSM007747.5E-36159218IPR003657WRKY domain
PfamPF031065.4E-25160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEGAMQESRE YWRDGGDVVG EELLREILDE TAAVHSNSNS NSNSNSNSKE AEEEDEREYF  60
AAAAADEQLQ VEAPYGRRRR ESMVNKLIST VYSGPTISDI ESALSFTAAG DHQLLADGHN  120
FAASSCSPVV FSPEKTLSKT MENKYTLKMK SCGNNGGLAD DGYKWRKYGQ KSIKNSPNPR  180
SYYRCTNPRC NAKKQVERAV DEPDTLIVTY EGLHLHYTYS HFLHSTSSSS SSTTTQQQLQ  240
PQPQMMTNCK KKPKLHLHPL LHDDPPPPPP EMTTMMIMQS FSIQQQQQDD DQLLQPAADD  300
HLMVQAPPDD CYNINGSSSS GLMMSLDDDE QAAGAGGLLE DVVPLLVRRP PPPICNNNNY  360
YYSPATTCTS DNEYGSSASA SPSSSVSVSS WTTPMSPCID MAILSNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201582161674Probable WRKY transcription factor 4
2lex_A1e-201582161674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106250.0AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence.
GenBankAY3418420.0AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds.
GenBankAY8706050.0AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641374.10.0probable WRKY transcription factor 49
TrEMBLA0A0D3EZ840.0A0A0D3EZ84_9ORYZ; Uncharacterized protein
STRINGOBART01G45510.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-41WRKY DNA-binding protein 49