PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G43800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 152aa MW: 15834.4 Da PI: 8.1009 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 42.7 | 8.7e-14 | 98 | 151 | 1 | 54 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarla 54 l++lLl+cA a ++g l +a+a+L+++ la+pdgd+mqR+aa f+eALa+r + OBART01G43800.1 98 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRAL 151 689************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.327 | 72 | 152 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-11 | 98 | 151 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MNARAGAGTL LLLLLEAELA AFCTLTSRAP LITKPQMRPF GGVALARLMV QDEGSSSSVT 60 SSPLHNFSNM PLHPAAAASP TPPWMVRELR SDERGLCLIH LLLNCAAAAA AGRLDAANAA 120 LEHIASLAAP DGDAMQRVAA AFAEALARRA LR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287540 | 0.0 | AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence. | |||
GenBank | AP003259 | 0.0 | AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610769.1 | 4e-63 | scarecrow-like protein 3 isoform X1 | ||||
Refseq | XP_015610776.1 | 1e-63 | scarecrow-like protein 3 isoform X2 | ||||
Swissprot | Q9LPR8 | 6e-27 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3EYM5 | 1e-101 | A0A0D3EYM5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G43800.1 | 1e-102 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 9e-07 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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