PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G40980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 691aa    MW: 77523.6 Da    PI: 6.6065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G40980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.4e-15112199197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk++    +++++ + +p +fa+++   +  +  + led  g +W+v+l    +++   ++ GWk+Fv ++++ +g+f+vF+ + rs f  +v
  OBART01G40980.1 112 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--TV 196
                      66666..5566666.9**********6443..337***************..999999*************************9998999..88 PP

                      EEE CS
               B3  95 kvf 97 
                      ++f
  OBART01G40980.1 197 QIF 199
                      877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-22106204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-19107202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.957109202IPR003340B3 DNA binding domain
CDDcd100172.09E-17110199No hitNo description
PfamPF023629.6E-12112199IPR003340B3 DNA binding domain
SMARTSM010199.0E-13112202IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32594689IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-12594687IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-10595687No hitNo description
SuperFamilySSF1019367.46E-14595685IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0035597689IPR003340B3 DNA binding domain
PfamPF023621.5E-7622685IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEAKEEHPGY HFPMRQVEKD GQVVRHQLAS MVELIKVPKI EQEEGNADSH GKEKADVVHE  60
EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI RIHGMASSSS EKARPTPTLP SFFKIMVGYF  120
SENMDIPLPF ARTITDMTGS NVYLEDAYGL RWRVRLYLHD DVLSFGHGWK NFVLDHDISV  180
GEFLVFRQIA RSVFTVQIFA ISACERIHLC ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK  240
DVVKRRKKPR TDEQRYDLDP RQHDMPVRVC IDSGSELRCS ESSVKELDAA PDKSHAVVQV  300
PATECNADPS YNAAGMKTIK NLEAIGASSS TKDVTWDANK SEDYPSFSYP ESSNVMTADK  360
ESERSHQDRP MQLYCELGLE DGNAETENCE NSNVLENAEL RTPLAMMDLN EVGIDDIFLS  420
ADIYEFDSDF CSPEAFSVDV NTEGLVANGR TPGDCFGMPE TSRCLENKQM TDVPRTSTDD  480
GSIAVHGIDI NALPSNTYPD IDAAPDDCKK DKDVLHSECN KVAQKVSVPA HSSVKQDITK  540
DGPRQIAAEI MSSGPKTCEL TYVRKNSVQP GNNSKGQESG GTKSCVVLAV AANSKKFCIT  600
IPPPDQTWLE LPRRLPVLPR TKKQARKILI LKDPSMRLWP VLYQCTPKFN GFIAGWADIS  660
RENNLREGDT CEFELCSNSE LSFQVLVPNL Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16779RRRKRVSDPQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645658.10.0B3 domain-containing protein Os01g0905400
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0D3EXK30.0A0A0D3EXK3_9ORYZ; Uncharacterized protein
STRINGOBART01G40980.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]