PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G39900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 49304.9 Da PI: 8.8903 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.5 | 4.8e-48 | 63 | 201 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp +++ +ekew+f+++rd+ky++g+r+nr+t+sgy OBART01G39900.1 63 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPGiehlinkldggaaMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGY 155 79***************************.89***************557999999888764455999************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl OBART01G39900.1 156 WKATGADRMIRAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 201 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-52 | 62 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.715 | 62 | 222 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 64 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MHMRRGRAAG GEGEAAAVVV MSRYDNNGHA AAAVAAAVAG GGGGGGGNKA AGEVDGHEDD 60 LVMPGFRFHP TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPGI EHLINKLDGG 120 AAMAAIGEKE WFFYVPRDRK YRNGDRPNRV TASGYWKATG ADRMIRAENN RPIGLKKTLV 180 FYSGKAPKGV RSSWIMNEYR LPPADTDRYH KTEISLCRVY KRTGIDDGHG HVSTARSSAH 240 SRGGGAAPVQ DNKQGSSSTS TPTPPPTPSK LHLLSSECTS PPAIVTDHAA MAAHKAPSPR 300 HHQQQQQQLH AAKPCGGYLQ NSSMASAAGG DQQQQFQQDF AAALYQQYSK NTSGAFASTY 360 SLLNLVNAAS MGSSAAAIDE LSSLVGHGTP SYINPAAGSH NYSQFLHLPT TPSSHQPTPA 420 PLGTLPMSLA AFSDRIWDWN NPIPEAGGRD YSTSTGFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 64 | 222 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 64 | 222 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 64 | 222 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 64 | 222 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-50 | 64 | 222 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 64 | 222 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102902 | 0.0 | AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631974.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A0D3EX70 | 0.0 | A0A0D3EX70_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G39900.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 9e-98 | NAC domain containing protein 35 |