PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G38000.3

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 488aa MW: 53536.2 Da PI: 6.5117

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G38000.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	243	273	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ OBART01G38000.3 243 AKTERRLAQNREAARKSRLRKKAYVQNLETS 273 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-7	240	316	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	242	286	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.9E-8	243	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.12E-7	244	287	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-7	244	288	No hit	No description
CDD	cd14708	1.15E-21	244	296	No hit	No description
PROSITE pattern	PS00036	0	247	262	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-29	325	399	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS 60 FLDFQPAAAA AAYFGELEEA LIHGANAGGV VVDPGMIRAD VHSKSAAAAA TAGYLAARPP 120 TLEIFPSWPM RQQQQLHSGN SQSVGSTTDS SSAQNTMPQM ELVSPASIRA SSEHQHQQQQ 180 PGQEVMMVTT DDYSYKPGLA AASPSFQQQH QLQHHQQQQL HGGGDHDKRK HGSTRKDGKS 240 VDAKTERRLA QNREAARKSR LRKKAYVQNL ETSRVRLQQI EQELQRARSQ GLFLGGCSAA 300 GDMSSGAAMF DMEYARWLDD DSKRLTDLRG GLQAHLLDTN LGLIVEECMQ HYDELFQLKA 360 ALARSDVFHL LTGTWATPAE RCFLWMGGFR PSDLLKILIQ QLDPLTEQQM LGIYSLQQSS 420 EQAEEALAQG LQQLHQSLAD TVAAGTLNDG PGVPNYMSLM AIALDKLASL ESFYQQVRQQ 480 LSIVIPFR

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS  60
FLDFQPAAAA AAYFGELEEA LIHGANAGGV VVDPGMIRAD VHSKSAAAAA TAGYLAARPP  120
TLEIFPSWPM RQQQQLHSGN SQSVGSTTDS SSAQNTMPQM ELVSPASIRA SSEHQHQQQQ  180
PGQEVMMVTT DDYSYKPGLA AASPSFQQQH QLQHHQQQQL HGGGDHDKRK HGSTRKDGKS  240
VDAKTERRLA QNREAARKSR LRKKAYVQNL ETSRVRLQQI EQELQRARSQ GLFLGGCSAA  300
GDMSSGAAMF DMEYARWLDD DSKRLTDLRG GLQAHLLDTN LGLIVEECMQ HYDELFQLKA  360
ALARSDVFHL LTGTWATPAE RCFLWMGGFR PSDLLKILIQ QLDPLTEQQM LGIYSLQQSS  420
EQAEEALAQG LQQLHQSLAD TVAAGTLNDG PGVPNYMSLM AIALDKLASL ESFYQQVRQQ  480
LSIVIPFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0D3EWJ2	0.0	A0A0D3EWJ2_9ORYZ; Uncharacterized protein
STRING	OMERI01G34450.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	2e-83	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]