PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G38000.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 570aa MW: 63121.8 Da PI: 7.0223

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G38000.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.7	1.4e-09	249	276	7	34
HHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeek 34 err+++NReAAr+sR+RKka++++Le+ OBART01G38000.2 249 ERRLAQNREAARKSRLRKKAYVQNLETS 276 8************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0033	242	305	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.554	249	289	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-6	249	278	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-7	249	298	No hit	No description
SuperFamily	SSF57959	6.88E-7	249	293	No hit	No description
PROSITE pattern	PS00036	0	250	265	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	341	415	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS 60 FLDFQPAAAA AAYFGELEEA LIHGANAGGV VVDPGMIRAD VHSKSAAAAA TAGYLAARPP 120 TLEIFPSWPM RQQQQLHSGN SQSVGSTTDS SSAQNTMPQM ELVSPASIRA SSEHQHQQQQ 180 PGQEVMMVTT DDYSYKPGLA AASPSFQQQH QLQHHQQQQL HGGGDHDKRK HGSTRKDGKS 240 VDAKVGYTER RLAQNREAAR KSRLRKKAYV QNLETSRVRL QQIEQELQRA RSQQQLQPAS 300 LQLADEGVPR SSHHGAVKSF AGAAMFDMEY ARWLDDDSKR LTDLRGGLQA HLLDTNLGLI 360 VEECMQHYDE LFQLKAALAR SDVFHLLTGT WATPAERCFL WMGGFRPSDL LKILIQQLDP 420 LTEQQMLGIY SLQQSSEQAE EALAQGLQQL HQSLADTVAA GTLNDGPGVP NYMSLMAIAL 480 DKLASLESFY QQADNLRQQT LHQLRRILTT RQAARCFLSI GEYYRRLRAL SNLWSSRPRE 540 NFIGTESVSP TGTELQPMHN QPQQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS  60
FLDFQPAAAA AAYFGELEEA LIHGANAGGV VVDPGMIRAD VHSKSAAAAA TAGYLAARPP  120
TLEIFPSWPM RQQQQLHSGN SQSVGSTTDS SSAQNTMPQM ELVSPASIRA SSEHQHQQQQ  180
PGQEVMMVTT DDYSYKPGLA AASPSFQQQH QLQHHQQQQL HGGGDHDKRK HGSTRKDGKS  240
VDAKVGYTER RLAQNREAAR KSRLRKKAYV QNLETSRVRL QQIEQELQRA RSQQQLQPAS  300
LQLADEGVPR SSHHGAVKSF AGAAMFDMEY ARWLDDDSKR LTDLRGGLQA HLLDTNLGLI  360
VEECMQHYDE LFQLKAALAR SDVFHLLTGT WATPAERCFL WMGGFRPSDL LKILIQQLDP  420
LTEQQMLGIY SLQQSSEQAE EALAQGLQQL HQSLADTVAA GTLNDGPGVP NYMSLMAIAL  480
DKLASLESFY QQADNLRQQT LHQLRRILTT RQAARCFLSI GEYYRRLRAL SNLWSSRPRE  540
NFIGTESVSP TGTELQPMHN QPQQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616930.1	0.0	transcription factor LG2 isoform X1
Refseq	XP_015616936.1	0.0	transcription factor LG2 isoform X1
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0D3EWJ1	0.0	A0A0D3EWJ1_9ORYZ; Uncharacterized protein
STRING	OBART01G38000.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-108	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]