PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G36770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 575aa MW: 62581.4 Da PI: 8.7426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 67 | 98 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEde l +av+ + g++Wk+I ++ + OBART01G36770.1 67 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 98 688************************99876 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 114 | 153 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l OBART01G36770.1 114 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 153 9************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 60.4 | 4e-19 | 159 | 202 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ OBART01G36770.1 159 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 202 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.504 | 62 | 105 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.33E-7 | 63 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 64 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.33 | 66 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-8 | 67 | 98 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.777 | 103 | 153 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-9 | 113 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 113 | 161 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-13 | 114 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-12 | 114 | 153 | No hit | No description |
SuperFamily | SSF46689 | 2.6E-29 | 132 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.34 | 154 | 208 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-18 | 158 | 206 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-17 | 159 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-14 | 161 | 204 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 162 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS 60 GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIEQRYNAC IDGKRFLILN LSKEDDQIID 120 LVKKYGPTKW SVIAKALPGR IGKQCRERWH NHLNPEIRKD AWTTEEEQAL INAHRIYGNK 180 WAEIAKVLPG RTDNSIKNHW NSSLRKKQDM YNTSNNMVVP KLLVHDKFKD KPKLMAMEGH 240 LDLNKAPIIN SKDQPGTAHR SNCSGFLSRS SLPTAQPLTS REASVVDGSA VTLVAQALES 300 DSVRGKGLEI DSVHEKGLEV NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY 360 QIPNMEDVVP VSSSLFSDHL TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK 420 SAANSFPGTP SILKRRKRDK STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF 480 LSLGSLDGSV KSFDVSPQYR ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS 540 TLSITEAPKL KEKEHAVQLE NLTKNFAHTT NLDVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-48 | 66 | 207 | 5 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-48 | 66 | 207 | 5 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 434 | 439 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940212 | 0.0 | FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616493.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_015616500.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D3EW27 | 0.0 | A0A0D3EW27_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G36770.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 9e-79 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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