PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G29370.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 787aa    MW: 89814 Da    PI: 6.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G29370.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.5e-16201041494
                      T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +rl +p  f+ ++        + + ++s + tl++++g++W v+l  +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f  +v
  OBART01G29370.2  20 RRLEIPQGFLIHIpevdhstfDASLPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 104
                      4688999999888888777773344488899**************..********************************998888..55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-206112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-216115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2387110IPR003340B3 DNA binding domain
CDDcd100177.85E-168107No hitNo description
SMARTSM010191.6E-1210110IPR003340B3 DNA binding domain
PfamPF023621.7E-1320103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW  60
PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG  120
SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC  180
GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD  240
ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL  300
QCDLTTKKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER  360
SEERQPSPAS MIYQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE  420
NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA  480
EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR  540
DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA  600
TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER  660
LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSD VMLPASAINF  720
PVLTKTKNVL KTSPAEISPD CANFPPYQKS RAHDKNERQG DSPVVIPATH DFFLALFSGS  780
SCVCSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322326KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D3ETI30.0A0A0D3ETI3_9ORYZ; Uncharacterized protein
STRINGOBART01G29370.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-13B3 family protein