PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G28650.7
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 481aa    MW: 52792 Da    PI: 10.9637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G28650.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.9e-13365400242
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeA 42 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t  +A
  OBART01G28650.7 365 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFAT-AGA 400
                      7********.**********64....55*********9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102506.4E-2089206IPR019378GDP-fucose protein O-fucosyltransferase
PROSITE profilePS5103215.975365402IPR001471AP2/ERF domain
PfamPF008474.6E-7365400IPR001471AP2/ERF domain
SMARTSM003805.9E-9365414IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-10365400IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-17365402IPR001471AP2/ERF domain
PRINTSPR003675.4E-8366377IPR001471AP2/ERF domain
PRINTSPR003675.4E-8388404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSSASAAAW WARSRVRILL PVIFLAPALY FLLSPPSSPP FFFTLPTSRE VSPSASGSRV  60
IWAQRRVAEW RPCGWWRAAM PAPSRRNGYI RIDCYGGLNQ LRRDLCDGIA VARLLNATMV  120
LPKFEVAAYW NESSGFADVF DVDYFIEQTR GYVEVVKDMP EEIASKEPFK VDCSKRKGHF  180
DYVETVLPAL LEHQYISLTP AMSQRRDSAI EAARGEDRKA LTAIKGTRVD RLREASDTGH  240
HRGRHKRARS SPPRHDDEPP PPPPLSPVVT GGAHGGAGGA EWHSTVLAED VESAVIVAAL  300
THVISSTAAE VTTAVPPVTV APQRAATATM FGQQVMQQPP RGFPPLPSSS GSAATAPEQQ  360
QPRRRYRGVR QRPWGKWAAE IRDPVKAARV WLGTFATAGA GASEATLQPR RRPEHHTGAR  420
SRRRCRSAAG GVPRPQQLRA HTAERRPGVR LPRRGFCRTN DDSWAVVVVV VIVDAAAIRG  480
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.10.0PREDICTED: uncharacterized protein LOC102713488
TrEMBLA0A0D3ET910.0A0A0D3ET91_9ORYZ; Uncharacterized protein
STRINGOBART01G28650.70.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-10ERF family protein