PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART01G27550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 22386.7 Da PI: 4.6556 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.6e-15 | 15 | 55 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l OBART01G27550.1 15 DDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 55 58***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-13 | 1 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 1 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.805 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 9 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.73E-12 | 15 | 55 | No hit | No description |
Pfam | PF00249 | 2.7E-13 | 16 | 55 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MNYLRPDIKR CPIADDEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKLI 60 AQGIDPRTHK PLTAAADHSN AAAAVAATSY KKAVPAKPPR TASSPAAGIE CSDDRARPAD 120 GGGDFAAMVS AADAEGFEGG FGDQFCAEDA VHGGFDMGSA SAMVGDDDFS SFLDSLINDE 180 HLGDLFVVEG NDHEHGNGEI GHGDVMESKQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-14 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108259 | 0.0 | AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence. | |||
GenBank | D88620 | 0.0 | D88620.1 Oryza sativa mRNA for OSMYB4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644524.1 | 1e-152 | transcription repressor MYB5 | ||||
TrEMBL | A0A0D3ESV5 | 1e-152 | A0A0D3ESV5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G27550.1 | 1e-153 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-39 | myb domain protein 5 |