PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G26850.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 318aa    MW: 33800.2 Da    PI: 8.0799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G26850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEdell  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  OBART01G26850.1 14 RGPWSPEEDELLRSYVRSHGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding361.6e-1171111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T +Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
  OBART01G26850.1  71 YTDQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                      699****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.218966IPR017930Myb domain
SuperFamilySSF466892.26E-2711109IPR009057Homeodomain-like
SMARTSM007178.4E-131364IPR001005SANT/Myb domain
PfamPF002491.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001679.18E-101662No hitNo description
PROSITE profilePS5129414.17667117IPR017930Myb domain
SMARTSM007173.4E-1167115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2170116IPR009057Homeodomain-like
PfamPF002494.6E-1070111IPR001005SANT/Myb domain
CDDcd001673.29E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDELLRSYVR SHGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTDQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMAM  120
HHHHQPPPPQ QQHYHHHHHH RVAGGGARVT LVSPPPAPQS QCASMQPSPA SASSSGGDAC  180
SFGAAATVLP SPSTQQAPQA ATLAVAGYTS VATAAAAAAV AAQRSPLDEL ICQVPPPPTT  240
TAADCWASGV TLDDVFLPEL VGAGEFPNGD LFGGFGPLLQ DRSSMELSAC YFPNAAAAEM  300
WPAATDIVKP AGLCHSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431200.0AK243120.1 Oryza sativa Japonica Group cDNA, clone: J100028J01, full insert sequence.
GenBankAP0033470.0AP003347.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0445E10.
GenBankAP0034520.0AP003452.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0478H03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631660.10.0transcription factor MYB4-like
TrEMBLA0A0D3ESL20.0A0A0D3ESL2_9ORYZ; Uncharacterized protein
STRINGOBART01G26850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-69myb domain protein 87