PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G26120.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1932aa MW: 216520 Da PI: 5.3713

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G26120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.9	1.3e-16	4	53	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OBART01G26120.1 4 SPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 53 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.4E-10	1	58	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.094	1	54	IPR001356	Homeobox domain
CDD	cd00086	1.28E-12	3	54	No hit	No description
SuperFamily	SSF46689	9.41E-14	3	53	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-14	4	53	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-14	4	53	IPR009057	Homeodomain-like
SMART	SM00571	6.2E-11	597	656	IPR018501	DDT domain
PROSITE profile	PS50827	12.747	597	656	IPR018501	DDT domain
Pfam	PF02791	2.5E-12	602	653	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	773	841	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.3E-10	996	1038	IPR028942	WHIM1 domain
Pfam	PF15613	3.9E-12	1174	1246	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1932 aa Download sequence Send to blast
MMKSPYQLEV LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR 60 REEEAAAVPL MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL 120 SAPDIGRRYY EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL 180 PPGSFGAPIV PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV 240 GNLPPVHPHA GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT 300 PGSHLLRGSD EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG 360 QYGISQVAGI ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ 420 DMMKRKREEQ MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR 480 RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM 540 LSLDSDTLQQ LDSFRDMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL 600 ASLHQVWKFS ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT 660 PSVALAVNPA GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN 720 AEDVYYRDDN EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF 780 HVLSLEGSKG LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK 840 SPYRKDPADS EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV 900 NIDVGDGKDP LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKPSLGKP 960 SSANTSSDSP VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL 1020 VALVSVANEG NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA 1080 DVNQENATES TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT 1140 PDTLSVQQYA YADKTRSQLR AYIGHRAEQL FVYRSLPLGQ DRRRNRYWQF STSASPNDPG 1200 SGRIFFECRD GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA 1260 VVEQSAGRYL KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYLDSFKI ELGRNDVEKT 1320 AISKRADVFI RWMWRECNDC KLTCAMEYGK KRCSELMHSC NYCYQIYLAE ERHCSSCHKN 1380 FKSIHNFSDH ASQCKDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW 1440 TDGYRKSWGV KLHSTTSLEE IFQPPSPFSS SSSNERQPDA ILEAQACGRQ HANELDHLHV 1500 CTFSSSNEWW YCSWFGWAHA DATDGSTRSM RTCCFTLHRK ATMSSCIPAQ TAAEQSQFIG 1560 REEWKDLYVS CSNMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL 1620 PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL 1680 DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR 1740 RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE 1800 WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID 1860 DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGG DGVEANADED 1920 EGGSSYSSEY SD

Sequence ? help Back to Top

Protein Sequence Length: 1932 aa Download sequence Send to blast

MMKSPYQLEV LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR  60
REEEAAAVPL MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL  120
SAPDIGRRYY EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL  180
PPGSFGAPIV PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV  240
GNLPPVHPHA GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT  300
PGSHLLRGSD EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG  360
QYGISQVAGI ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ  420
DMMKRKREEQ MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR  480
RAEKQRQKEE LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM  540
LSLDSDTLQQ LDSFRDMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL  600
ASLHQVWKFS ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT  660
PSVALAVNPA GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN  720
AEDVYYRDDN EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF  780
HVLSLEGSKG LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK  840
SPYRKDPADS EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV  900
NIDVGDGKDP LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKPSLGKP  960
SSANTSSDSP VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL  1020
VALVSVANEG NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA  1080
DVNQENATES TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT  1140
PDTLSVQQYA YADKTRSQLR AYIGHRAEQL FVYRSLPLGQ DRRRNRYWQF STSASPNDPG  1200
SGRIFFECRD GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA  1260
VVEQSAGRYL KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYLDSFKI ELGRNDVEKT  1320
AISKRADVFI RWMWRECNDC KLTCAMEYGK KRCSELMHSC NYCYQIYLAE ERHCSSCHKN  1380
FKSIHNFSDH ASQCKDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW  1440
TDGYRKSWGV KLHSTTSLEE IFQPPSPFSS SSSNERQPDA ILEAQACGRQ HANELDHLHV  1500
CTFSSSNEWW YCSWFGWAHA DATDGSTRSM RTCCFTLHRK ATMSSCIPAQ TAAEQSQFIG  1560
REEWKDLYVS CSNMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL  1620
PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL  1680
DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR  1740
RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE  1800
WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID  1860
DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGG DGVEANADED  1920
EGGSSYSSEY SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1742	1752	RTRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D3ESC4	0.0	A0A0D3ESC4_9ORYZ; Uncharacterized protein
STRING	OBART01G26120.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator