PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G26080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 35799 Da PI: 8.6817 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.4 | 5.2e-27 | 69 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+Ptd+el+ e+L+ k++ + ++++ i+ +i++++P++Lp + ++++ + +y+tg+rk+r+++ + OBART01G26080.1 69 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGTSRQGRPDPAL--LPPPAYTTGTRKRRKVHtdeqggE 159 799************.99****998885665443333333665557**********554444334433..445678999999997444455557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l OBART01G26080.1 160 TRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 208 78************.9*************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-33 | 61 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.607 | 69 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-13 | 70 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQVSQHVN LIKTCPSCGH RAQYEQAAAA 60 ATIQDLPGLP AGVKFDPTDQ ELLEHLEGKA RPDARKLHPL IDEFIPTIEG ENGICYTHPE 120 RLPGTSRQGR PDPALLPPPA YTTGTRKRRK VHTDEQGGET RWHKTGKTRP VFTGGKLKGY 180 KKILVLYTNY GKQRKPEKTN WVMHQYHLGS DEEEKDGELV VSKVFYQTQP RQCGGGSTAT 240 AKDLSVDLVA GNNIKASNAA AEHHHNDGVG GGGHGGNNSS MLKEAAGIVD FYNPAAALIG 300 YSQAAPNNRA AASAHLTMPN FEVHTGGAGF GP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102794 | 0.0 | AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626614.1 | 0.0 | NAC domain-containing protein 73 isoform X2 | ||||
Swissprot | O49459 | 1e-112 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0D3ESC0 | 0.0 | A0A0D3ESC0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G26080.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-111 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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