PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 619aa    MW: 63173.8 Da    PI: 8.482
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.71.4e-1667127257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  OBART01G25820.1  67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqdygQVGDANVFYWFQNRKSRSKN 127
                      89*****************99*************************************995 PP
2Wus_type_Homeobox109.12.5e-3566128264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+ yG+++d+NVfyWFQNrk+R+++k
    OBART01G25820.1  66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQDYGQVGDANVFYWFQNRKSRSKNK 128
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89663128IPR001356Homeobox domain
SuperFamilySSF466896.13E-1165129IPR009057Homeodomain-like
SMARTSM003898.2E-565132IPR001356Homeobox domain
CDDcd000862.64E-666128No hitNo description
PfamPF000463.1E-1467126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-667127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE  60
ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQDYGQVG DANVFYWFQN  120
RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAATAHREAV APSFTLPPIL PPQPVQPQQQ  180
LVSPVAAPTS LSSSSSDRSS GSSKPARATS TQAMSLRSGG TGRAGLGLGG NRASAPAAAH  240
REAVAPSFTP PPPILPAPQP VQPQQQLVSP VAAPTSSSSS SSDRSSGSSK PARATSTQAM  300
SVTTAMDLLS PLAAACHQQM LYQGQPLESP PAPAPKVHGI VPHDEPVFLQ WPQSPCLSAV  360
DLGAAILGGQ YMHLPVPAPQ PPSSPGAAGM FWGLCNDVQA PNNTGHKSCA WSAGLGQHWC  420
GSADQLGLGK SSAASIATVS RPEEAHDVDA TKHSLLQYGF GITTPAVHVD VTSSAAGVLP  480
PVPSSPSPPN AAVTVASVAA TASLTDFAAS AISAGAVANN QFQGLADFGL VAGACSGAGA  540
AAAGAPEAGS SVAAVVCVSV AGAAPPLFYP AAHFNVRHYG DEAELLRYRG GSRTEPVPVD  600
ESGVTVEPLQ QGAVYIVVM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875666.10.0WUSCHEL-related homeobox 7
SwissprotQ0JKK60.0WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A0D3ES870.0A0A0D3ES87_9ORYZ; Uncharacterized protein
STRINGOBART01G25820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-43homeobox-3