PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G25780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 27512.6 Da PI: 5.3952 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.4 | 1.4e-19 | 27 | 162 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 hP+++el+ yL+++v + + + +i+e+d+y+++P dL + + +++++ wyfFs + +g rk r+++ +g W OBART01G25780.1 27 VHPSEQELIETYLRPRVVSGDkpppssS---ScgfIIHEADVYSADPADLTRgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCW 115 69*************9877765766543...14437**************8557777544558889*****98775..588999976644788* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ k+vl++ +g+ g ++++ f ++ ++ + +++ W+m e +l OBART01G25780.1 116 HSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 162 *9999999998868889**********5436667789*****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.915 | 21 | 178 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-26 | 27 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-13 | 27 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS EQELIETYLR PRVVSGDKPP PSSSSCGFII 60 HEADVYSADP ADLTRGFAPA VARSSGDEAW YFFSAVRGLK GGRKARTVDD GAGCWHSEAG 120 AKPVLAASSG RRLGHRQSFS FITKDDDGQR VRSGWLMVEL SLDVDEEEQL VLSKLIDMPE 180 IREFIMRGSY LGGGPAPPRY ECDHPAMVMT GGDDQQQLDE QRRDDVGDDR AHYDRVDGQL 240 QFERHYLQM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638896.1 | 1e-106 | uncharacterized protein LOC107276912 | ||||
TrEMBL | A0A0D3ES84 | 0.0 | A0A0D3ES84_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G25780.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-11 | NAC domain containing protein 2 |