PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 91aa    MW: 10417.5 Da    PI: 7.6787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-082064344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G g    +++++r mg ++t+ +++ ++
  OBART01G25520.1 20 EWSKKENKLFEEALAYYGEGapdLFHKVSRAMGGTKTADEVRRHY 64
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-41770IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-101974IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-42066IPR009057Homeodomain-like
PfamPF002491.6E-62064IPR001005SANT/Myb domain
CDDcd001674.07E-42064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRSSSSSR NSNSVNMDSE WSKKENKLFE EALAYYGEGA PDLFHKVSRA MGGTKTADEV  60
RRHYEILEDD LKLIEARRVP FPKYNTQGAW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1921891178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032841e-150AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149571e-150AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.11e-42protein RADIALIS-like 3
SwissprotQ6NNN03e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D3ES514e-61A0A0D3ES51_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YCS54e-61A0A0D9YCS5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0C5M94e-61A0A0E0C5M9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FQK34e-61A0A0E0FQK3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N0B44e-61A0A0E0N0B4_ORYRU; Uncharacterized protein
TrEMBLA2WTH24e-61A2WTH2_ORYSI; Uncharacterized protein
TrEMBLA2ZW924e-61A2ZW92_ORYSJ; Os01g0663051 protein
TrEMBLI1NQE44e-61I1NQE4_ORYGL; Uncharacterized protein
STRINGOGLUM01G29330.16e-62(Oryza glumipatula)
STRINGOMERI01G22390.16e-62(Oryza meridionalis)
STRINGORUFI01G28390.16e-62(Oryza rufipogon)
STRINGOS01T0663051-006e-62(Oryza sativa)
STRINGONIVA01G28760.16e-62(Oryza nivara)
STRINGORGLA01G0208400.16e-62(Oryza glaberrima)
STRINGOBART01G25520.16e-62(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-21RAD-like 6