PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G18830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 39082.3 Da PI: 5.9441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.5e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + + ++G g+W+++++ g+ R++k+c++rw +yl OBART01G18830.1 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ OBART01G18830.1 70 RGSFSQQEEELIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 113 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 9 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.845 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.12E-12 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.972 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-11 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRESAAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW 60 INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIASQLP GRTDNEIKNF WNSCLKKKLR 120 QRGIDPATHK PLNDGGAGAE EEHHDDGDKQ QQQQQLMDDV DDCFAIGGGG SSDSLAPPHS 180 PAVSFDPLSV TNVPTTMMQS SSSPYGAAGG EHSSFRSDNL CDYGGSGGGV DVVSDAGTYS 240 AYTGDSSSNS NSTAWTCGSV VVGGAGELPP PPLLPHMDMF GRVDAEPPPY PPFDVPARFS 300 PWHHHHHHHH EPTLPTPPQR LDGGGGAAAS FPIRSLSRDM PESCFDLGRG ALDDEFGVDF 360 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 119 | 3 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | LKKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643158.1 | 0.0 | myb-related protein Hv33 | ||||
TrEMBL | A0A0D3EPX1 | 0.0 | A0A0D3EPX1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G18830.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 4e-75 | myb domain protein 86 |