PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G16010.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 265aa    MW: 28786.1 Da    PI: 8.2056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G16010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-09592033128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tksg 81 
                       Gf+  Pt  elv ++L+++++g ++   +v  i    d   + P dL +    +++ + + e ++F++r++  + + r++ a        + g
  OBART01G16010.1  59 TGFQDTPTVGELVLRHLRPRLRGFHCADGDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGAGG 151
                      69999*******************9766565424444699********74334322223.2588999999887765555544456666655589 PP

              NAM  82 yWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                       Wk+  tg+ k+v++ +  + + k+   fy   +g + ++    Wv+ ey++
  OBART01G16010.1 152 LWKKswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203
                      9**645899******888888999999***43333444445679******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.1357230IPR003441NAC domain
SuperFamilySSF1019416.02E-2458229IPR003441NAC domain
PfamPF023653.6E-759203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAISAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDDAS EASDNLRATG  60
FQDTPTVGEL VLRHLRPRLR GFHCADGDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE  120
AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKKSWTGS GKSVTDLGVV VPWSKTCYCF  180
YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASKKRKRNRC  240
DEAVAARAVA GTESKSYPVC GLTAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.10.0uncharacterized protein LOC107275546
TrEMBLA0A0D3ENZ10.0A0A0D3ENZ1_9ORYZ; Uncharacterized protein
STRINGOBART01G16010.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010