PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G14260.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 16832.2 Da PI: 4.404

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G14260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.8	6.8e-09	6	39	10	43
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43 t+ k ++ ++ A ELS+LC+++va++ ++ OBART01G14260.1 6 DATYGKMQESLMEEARELSILCGIDVALLCAGGP 39 67999************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.349	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-8	6	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.5E-7	7	37	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGID VALLCAGGPG TGDGDGGGVV STAEVAVWES 60 EEGVFASYRA ILPRPEAHTL RECLELKLAR ERAKLAMVRQ CRDLCMHLWD DTVSYISTAE 120 EARALLESMD AAMVAATARR EALRWVYWTT ATP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003331	0.0	AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBank	AP003337	0.0	AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3ENE1	1e-106	A0A0D3ENE1_9ORYZ; Uncharacterized protein
STRING	OBART01G14260.1	1e-106	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23165	5	5