PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G14250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 302aa    MW: 32304.9 Da    PI: 6.3776
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G14250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141647839
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +r  tf++R+++++K A+ELSvLCda+vav++
  OBART01G14250.1 16 KRAATFARRKETVMKMAKELSVLCDAQVAVVV 47
                     6899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.22E-15162IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.671161IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-7323IPR002100Transcription factor, MADS-box
CDDcd002663.37E-21387No hitNo description
PfamPF003196.7E-131552IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPRAKTPMGL IPFPKKRAAT FARRKETVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW  60
ESEEGVRAKR SLTHREYLRG ELRKQRAKLA KVREEGAFKP WDDALDGIAE EETRKLHKYL  120
SDKIEAARAR MEAMGLQLGD VDDNGVNGDD GGGLDLQQHV PPSASDAKEF ESVPVPLAFS  180
TAGADFINAP NNFLTTGVSV SDYSVQSSGY GIGNQIDNAK QLLYQMQMQY PVGGTGGAEP  240
SNTQTQSPDL RSFSNVVGDY SYTAAQSSAN RLDQMHHPVG GRGSTGGAAA DPSDTQSKNR  300
GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3ENE00.0A0A0D3ENE0_9ORYZ; Uncharacterized protein
STRINGOBART01G14250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.16e-08AGAMOUS-like 92