PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G12830.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 356aa    MW: 40034.1 Da    PI: 10.3029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G12830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.53.3e-0961119155
          G2-like   1 kprlrWtpeLHerFveav.eqLGGsekAtPktile...lmkvkgLtlehvkSHLQkYRl 55 
                      kpr +Wt    ++F ea  e+L  s k +P ++l+    m+  gLtl+++ S LQkYRl
  OBART01G12830.1  61 KPRFVWTLRQNAKFSEAYkEELSRSGKVVPTKLLKrfkSMNETGLTLQNISSRLQKYRL 119
                      79***************8357**********998633379******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-758123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1159123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLPAASLHGD SNGSTTTASS SSGNRATNRR NQCWETTAKQ VSTVQGEAAQ EQPAAQNQPR  60
KPRFVWTLRQ NAKFSEAYKE ELSRSGKVVP TKLLKRFKSM NETGLTLQNI SSRLQKYRLS  120
LKRQTSHVDQ STSTDSTTAS SIKTKQTPAL LQQIIHPRAL HTQLAPDVHQ VITTNLPQQH  180
IQHYHNMHHQ QVERLSEPHS NEPIYKEYNN LAQRFTQVNY HGHSSIHDHH YANIIKKLLP  240
PNVMQPCDLI NALPQQPAAA TACCMQSNTQ TVSSALIVKG MQNHPPDHHI QAFGVLDMGT  300
AQYMGQQLNM YTAEGNWRGT TPQNMRPISQ VHRHVSEPPP SYFSNKQKQM AGLKKI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0072040.0AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3EMZ30.0A0A0D3EMZ3_9ORYZ; Uncharacterized protein
STRINGOBART01G12830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1985788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-06response regulator 2