PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G12250.5

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 730aa MW: 81400.8 Da PI: 5.8427

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G12250.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.8	2.7e-37	106	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q OBART01G12250.5 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.6E-28	101	168	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.248	104	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.1E-34	105	184	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-28	107	180	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT 240 QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND 300 AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR 360 LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI 420 GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCIF GGKYLIQEAT EKLLDDTKMQ 480 RGPQCLTFSC SFPSTSGRGF IEVEDHDQSS LSFPFVVAEE DVCSEIRTLE HLLNLVSFDD 540 TLVEKNDLLA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDR 600 EFCAVIKKLL DTLFQGGVDL DVQSTVEFVL KQDLVFVAVN KRSKPLIDFL LTYTTSSAPM 660 DGTESAAPAQ FLFTPDIAGP SDITPLHIAA TYSDTAGVLD ALTDDPQQVL TLNTCDFTES 720 THAFLFLIFP

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS  60
PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR  120
DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK  180
VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT  240
QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND  300
AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR  360
LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI  420
GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCIF GGKYLIQEAT EKLLDDTKMQ  480
RGPQCLTFSC SFPSTSGRGF IEVEDHDQSS LSFPFVVAEE DVCSEIRTLE HLLNLVSFDD  540
TLVEKNDLLA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDR  600
EFCAVIKKLL DTLFQGGVDL DVQSTVEFVL KQDLVFVAVN KRSKPLIDFL LTYTTSSAPM  660
DGTESAAPAQ FLFTPDIAGP SDITPLHIAA TYSDTAGVLD ALTDDPQQVL TLNTCDFTES  720
THAFLFLIFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	98	180	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068471	0.0	AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.
GenBank	AK072849	0.0	AK072849.1 Oryza sativa Japonica Group cDNA clone:J023142C13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614292.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_015614297.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025880633.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D3EMS6	0.0	A0A0D3EMS6_9ORYZ; Uncharacterized protein
STRING	ORGLA01G0103500.1	0.0	(Oryza glaberrima)
STRING	OBART01G12250.2	0.0	(Oryza barthii)
STRING	OBART01G12270.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-150	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]