PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G11950.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 642aa MW: 67120 Da PI: 6.513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.4 | 8.2e-16 | 388 | 434 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq OBART01G11950.3 388 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 434 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-19 | 381 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-17 | 381 | 438 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-20 | 382 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 384 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-13 | 388 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-17 | 390 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MSDGNDFAEL LWENGQAVVH GRKKHPQPAF PPFGFFGGTG GGGGGSSSRA QERQPGGIDA 60 FAKVGGGFGA LGMAPAVHDF ASGFGATTQD NGDDDTVPWI HYPIIDDEDA AAPAALAAAD 120 YGSDFFSELQ AAAAAAAAAA PPTDLASLPA SNHNGATNNR NAPVATTTTR EPSKESHGGL 180 SVPTTRAEPQ PQPQLAAAKL PRSSGSGGGE GVMNFSLFSR PAVLARATLE SAQRTQGTDN 240 KASNVTASNR VESTVVQTAS GPRSAPTFAD QRAAAWPPQP KEMPFASTAA APMAPAVNLH 300 HEMGRDRAGR TMPVHKTEAR KAPEATGATS SVCSGNGAGS DELWRQQKRK CQAQAECSAS 360 QDDDLDDEPG VLRKSGTRST KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA 420 SMLDEAIEYL KTLQLQVQLS LTQMMSMGTG LCIPPMLLPT AMQHLQIPPM AHFPHLGMGL 480 GYGMGVFDMS NTGALQMPPM PGAHFPCPMI PGASPQGLGI PGTSTMPMFG VPGQTIPSSA 540 SSVPPFASLA GLPVRPSGVP QVSGAMANMV QDQQQGIANQ QQQCLNKEAI QGANPGDSQM 600 QIIMQGDNEN FRIPSSAQTK SSQFSDGTGK GTNARERDGA ET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 397 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102252 | 0.0 | AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619027.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A0D3EMN1 | 0.0 | A0A0D3EMN1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G11950.3 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 8e-25 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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