PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G11800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 265aa    MW: 28559.7 Da    PI: 4.7524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G11800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l++++++ G g W++ ++  g+ R++k+c++rw +yl
  OBART01G11800.1 14 RGRWTKEEDEKLARYIRENGEGAWRSMPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding46.67.9e-1567116148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+++++++++ lG++    W++Ia +++ gRt++++k++w+++l
  OBART01G11800.1  67 RGNISPQEEDIILNLHATLGNRlscLWSLIAGHLP-GRTDNEIKNYWNSHL 116
                      7899*******************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129421.098965IPR017930Myb domain
SuperFamilySSF466891.55E-2511112IPR009057Homeodomain-like
SMARTSM007177.4E-121363IPR001005SANT/Myb domain
PfamPF002495.2E-151461IPR001005SANT/Myb domain
CDDcd001679.26E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2265119IPR009057Homeodomain-like
PROSITE profilePS5129416.93366120IPR017930Myb domain
SMARTSM007171.1E-1166118IPR001005SANT/Myb domain
PfamPF002492.5E-1367116IPR001005SANT/Myb domain
CDDcd001679.80E-1071116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SPQEEDIILN LHATLGNRLS CLWSLIAGHL PGRTDNEIKN YWNSHLSRKG  120
YEFLRGGGGG GIDNVSAASH SHREEQAQAS ASGLTSDGLE EGPLGLSEEM VSGPVGPVSP  180
KPEVGQDGSS AESGCCGPSG PSGPTEAVGQ DMGDKSMDWD LVGLDDGFAN DDMWGSLSWD  240
YGELVGPDGV HQGEVLSDLF FLGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22121195107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2886990.0AK288699.1 Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence.
GenBankAP0028710.0AP002871.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0475H04.
GenBankAP0028730.0AP002873.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0552C05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628164.11e-163myb-related protein P
SwissprotP278986e-66MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0D3EML30.0A0A0D3EML3_9ORYZ; Uncharacterized protein
STRINGOBART01G11800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-68myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]