PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G11630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 259aa MW: 28791.5 Da PI: 7.0207 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 193 | 226 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+++gL+ +q+ +WF N+R ++ OBART01G11630.1 193 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 226 69*****************************885 PP | |||||||
2 | ELK | 33.4 | 9.7e-12 | 146 | 167 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ OBART01G11630.1 146 ELKEMLLKKYSGCLSRLRSEFL 167 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.4E-19 | 1 | 43 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-20 | 1 | 41 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.5E-28 | 49 | 100 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-24 | 52 | 99 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.1E-8 | 146 | 167 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 146 | 166 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 146 | 167 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.843 | 166 | 229 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.25E-19 | 168 | 231 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-13 | 168 | 233 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-27 | 171 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.94E-13 | 178 | 230 | No hit | No description |
Pfam | PF05920 | 5.1E-17 | 186 | 225 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 204 | 227 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKAQIAGHPR YPTLLSAYIE CRKVGAPPEV ASLLEEIGRE RRAGGGGGGA GQIGVDPELD 60 EFMEAYCRVL VRYKEELSRP FDEAASFLSS IQTQLSNLCS GATSPPATTA THSDEMVGSS 120 DEDQCSGETD MLDIGQEQSS RLADHELKEM LLKKYSGCLS RLRSEFLKKR KKGKLPKDAR 180 SALLEWWNTH YRWPYPTEED KLRLAARTGL DPKQINNWFI NQRKRHWKPS DGMRFALMEG 240 VAGGSSGTTL YFDTGTIGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 170 | LRSEFLKKRK |
2 | 167 | 171 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028883 | 0.0 | AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634297.1 | 0.0 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 0.0 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0D9Y7A2 | 0.0 | A0A0D9Y7A2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NM88 | 0.0 | I1NM88_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G14210.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORGLA01G0097800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-78 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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