PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G11380.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 341aa MW: 38049.7 Da PI: 7.2982

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G11380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	43	85	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L OBART01G11380.1 43 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85 56889*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	35	88	No hit	No description
SMART	SM00338	9.8E-8	41	104	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	43	87	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-7	44	85	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.52E-7	45	88	No hit	No description
PROSITE pattern	PS00036	0	48	63	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-33	127	202	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MADMSPRTDT STDDTDDNHM LEPGQLAVVA ASDSDRSKDK HEDQKTLRRL AQNREAARKS 60 RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QTHSMSGNGA LAFDMEYARW 120 LEEHNRQINE LRSAVNAHAG DNELHGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT 180 PAERCFLWLG GFRPSELLKL LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS 240 LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR 300 QSAPITLRGF VPLVPSGLLG RKNSKRNNEI SNFYSFDLPG N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051296	0.0	AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBank	AK242743	0.0	AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBank	HM991168	0.0	HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBank	KM096571	0.0	KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621703.1	0.0	transcription factor TGA2.3
Refseq	XP_015621704.1	0.0	transcription factor TGA2.3
Refseq	XP_025880532.1	0.0	transcription factor TGA2.3
Swissprot	Q0JNL3	0.0	TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBL	A0A0D3EMF9	0.0	A0A0D3EMF9_9ORYZ; Uncharacterized protein
STRING	OBART01G11380.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-141	bZIP family protein

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]