PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G11140.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 488aa MW: 52644.2 Da PI: 7.4827

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G11140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	108	167	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++ OBART01G11140.1 108 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHV 167 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	105	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	110	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAALRQGDNP AIKLFGRTIP LLLDPAAAAA ADEVMPNLGN GVKTNNDLPL VSDKLLIVKG 60 IPFCPNNSKK NDLQGISRPD GRIEIDSMTE DVKTEPDGSV PEKILKKPDK ILPCPRCNSM 120 ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHVLKY RQAMMTCNNT 180 VAPGDVSDVV HHQVITHGSS LLPATLKENE TPTEFISEVP PCKSSASILD IGEPNDTDLV 240 PLASGDNKEE KSCASSVVVS SCSENLMPDN AIMKEPNNRS GCCNGVALPF PTGPALVLPW 300 SLGWNSVALM PATQCSTQPV LGLKDGIPCP PSWPPQLMVP APGICTPVVP IPLVPPLWSC 360 FPGWPNGMWN AQCPGGNTTV LPSTAPNKIS CSGSSSLVLG KHSREESLQE EEKTRNYLWV 420 PKTLRIDDPA EAAKSSIWAT LGIKPDDKGI FKSFQPNVAK NGTAPESPQA LQANPAAFSR 480 SQSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAALRQGDNP AIKLFGRTIP LLLDPAAAAA ADEVMPNLGN GVKTNNDLPL VSDKLLIVKG  60
IPFCPNNSKK NDLQGISRPD GRIEIDSMTE DVKTEPDGSV PEKILKKPDK ILPCPRCNSM  120
ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHVLKY RQAMMTCNNT  180
VAPGDVSDVV HHQVITHGSS LLPATLKENE TPTEFISEVP PCKSSASILD IGEPNDTDLV  240
PLASGDNKEE KSCASSVVVS SCSENLMPDN AIMKEPNNRS GCCNGVALPF PTGPALVLPW  300
SLGWNSVALM PATQCSTQPV LGLKDGIPCP PSWPPQLMVP APGICTPVVP IPLVPPLWSC  360
FPGWPNGMWN AQCPGGNTTV LPSTAPNKIS CSGSSSLVLG KHSREESLQE EEKTRNYLWV  420
PKTLRIDDPA EAAKSSIWAT LGIKPDDKGI FKSFQPNVAK NGTAPESPQA LQANPAAFSR  480
SQSFQETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066984	0.0	AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	A0A0D3EMC5	0.0	A0A0D3EMC5_9ORYZ; Uncharacterized protein
STRING	OBART01G11140.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-62	cycling DOF factor 2