PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G10260.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 531aa MW: 58000.6 Da PI: 4.8195

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G10260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.2e-40	144	203	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s OBART01G10260.1 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 203 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	141	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MCDKDPGIKL FGRVIPLAPE AEAAAAAQDE DHHKETEESK DDEMKVDVPQ EEEDNEMKVD 60 APQEKKDNEV TADVPEEKGN DEMRVDASES IESIEPVSRS TLDNKKEDQG QMNSVEEKAA 120 SDSKDENEKT ANDESGQDKV LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKS KSSSLHYRHL LMAPDCMMGS RVEISKSMNP EAFASAHSTP 240 IQPIGRNETV LKFGPEVPLC ESMASVLNIQ EQNGTNAAAV PTGENQEDNS CISSITSHNV 300 LPENAAQVDK NSTPVYCNGV GPVPQYYLGA PYMYPWNIGW NNVPMMVPGT SMPESASQSE 360 SCSTSSAPWM NMNSPMMPVA SRLSAPPFPY PLVPPALWGC LSSWPATAWN IPWIRTNGGC 420 MSPSSSSNSS CSGNGSPLGK HSRDSSLPLK EDKEEKSLWV PKTLRIDDPD EAAKSSIWAT 480 LGIKPGDPGI FKPFQSKGES KGQAASETRP ARALKANPAA LSRSQSFQET S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MCDKDPGIKL FGRVIPLAPE AEAAAAAQDE DHHKETEESK DDEMKVDVPQ EEEDNEMKVD  60
APQEKKDNEV TADVPEEKGN DEMRVDASES IESIEPVSRS TLDNKKEDQG QMNSVEEKAA  120
SDSKDENEKT ANDESGQDKV LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKS KSSSLHYRHL LMAPDCMMGS RVEISKSMNP EAFASAHSTP  240
IQPIGRNETV LKFGPEVPLC ESMASVLNIQ EQNGTNAAAV PTGENQEDNS CISSITSHNV  300
LPENAAQVDK NSTPVYCNGV GPVPQYYLGA PYMYPWNIGW NNVPMMVPGT SMPESASQSE  360
SCSTSSAPWM NMNSPMMPVA SRLSAPPFPY PLVPPALWGC LSSWPATAWN IPWIRTNGGC  420
MSPSSSSNSS CSGNGSPLGK HSRDSSLPLK EDKEEKSLWV PKTLRIDDPD EAAKSSIWAT  480
LGIKPGDPGI FKPFQSKGES KGQAASETRP ARALKANPAA LSRSQSFQET S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP001383	0.0	AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618265.1	0.0	cyclic dof factor 2
TrEMBL	A0A0D3EM18	0.0	A0A0D3EM18_9ORYZ; Uncharacterized protein
STRING	OBART01G10260.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-71	cycling DOF factor 2