PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G09920.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 437aa    MW: 46319.2 Da    PI: 8.3709
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G09920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-102349127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C yG++C+++H++
  OBART01G09920.1 23 PGEADCVYYLRTGACGYGENCRYNHPR 49
                     57899********************96 PP
2zf-CCCH37.44.3e-127399127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++++GtCk+G++Ck+ H++
  OBART01G09920.1 73 PGQPVCEYYMKNGTCKFGSNCKYDHPR 99
                     5789*********************96 PP
3zf-CCCH33.57e-11118143227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  OBART01G09920.1 118 GEKDCTYYVKTGHCKFGSTCKFHHPE 143
                      5789********************96 PP
4zf-CCCH37.44.3e-12271297127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  OBART01G09920.1 271 PGQPECQYYLKTGSCKFGSACKYHHPQ 297
                      5789*********************97 PP
5zf-CCCH28.72.3e-09319343327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  OBART01G09920.1 319 SQPCAYYTQHGFCKFGPTCKFDHPM 343
                      679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-62249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2112250IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-72449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-62651IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-42849IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.76572100IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-77299IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-97499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-577100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502116144IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5116143IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8118143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4122142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413270298IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6270297IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5274297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4276296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69316344IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5316343IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6318346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5320341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGLGGGGGGG GEAVAAGRLP ERPGEADCVY YLRTGACGYG ENCRYNHPRD RAAAAVLNGG  60
GKTTHSAEYP ERPGQPVCEY YMKNGTCKFG SNCKYDHPRE GSVQAVMLNS SGYPLRSGEK  120
DCTYYVKTGH CKFGSTCKFH HPEIGGVSET PNMYPPVQPQ PISSSHPYQH LAGWQMGRPP  180
VLPGSFLSGS YPPMMLPSTV VPMQGWNPYI SPVNQVASAG GHQTVQAGPF YGLSHQGPSA  240
AVTYGSQYAP LSSSTMPSSS SKQEPAFPAR PGQPECQYYL KTGSCKFGSA CKYHHPQYLN  300
TPKSNCMLSP LGLPLRPGSQ PCAYYTQHGF CKFGPTCKFD HPMGTLSYSP SASSITDLPI  360
APYPLNYAVA PVAPPSSSSD LRPEYLLTKE FSANQSASPG TTCGPAGAML KAYAPHMLIR  420
PQTSGAGGMV TTHGGEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0D9Y6990.0A0A0D9Y699_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FJL40.0A0A0E0FJL4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MU560.0A0A0E0MU56_ORYRU; Uncharacterized protein
TrEMBLI1NM100.0I1NM10_ORYGL; Uncharacterized protein
STRINGOGLUM01G11340.10.0(Oryza glumipatula)
STRINGORUFI01G10840.10.0(Oryza rufipogon)
STRINGOS01T0257400-010.0(Oryza sativa)
STRINGONIVA01G12440.10.0(Oryza nivara)
STRINGORGLA01G0090000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-109C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]