PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G08800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 442aa MW: 46171.1 Da PI: 5.0219 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51.8 | 1.9e-16 | 209 | 248 | 1 | 41 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL 41 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+++ L OBART01G08800.1 209 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIEIL 248 5689*****************.***************9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-7 | 207 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 207 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-14 | 209 | 246 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADVADEVD AFIVDDSCLL EYIDFSCCDV 60 PFFHADDGDI LPDLEVDPTE LLAEFASSPD DEPPPTSAAS PGEPAAAGGA KEDVKEDGAA 120 AAADYDGSPP PPRGKKKDEE ERSSSLLEEK DAKNGGGGGD EVLSAVTTED SSAGAAKSSS 180 PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL 240 ELMGIEILFL WLKPCNGDAP KLSSRHATSR HCHGRPRMLH RCPLALFASF CHLRSEISVA 300 QEASDGEGGG GGELDAEAAD AARKWGPQAV TPGTPCMPPP LPPAAMLQRF PVPPVPGMVP 360 HPMYRPIPPP LPPQGNKLAA LQLQLDAHPS KESIDAAIGD VLVKPWLPLP LGLKPPSLDS 420 VMSELHKQGI PKVPPAASGA AG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834042 | 0.0 | CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence. | |||
GenBank | CT834043 | 0.0 | CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence. | |||
GenBank | CT834044 | 0.0 | CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615905.1 | 1e-124 | probable transcription factor GLK2 isoform X1 | ||||
Swissprot | Q5NAN5 | 1e-125 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A0D3ELK5 | 0.0 | A0A0D3ELK5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G08800.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-19 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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