PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 447aa    MW: 50213.3 Da    PI: 7.2085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.2e-16111190186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l++
  OBART01G08400.1 111 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHKTTY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVH 190
                      899********************999433..5679***************..888888..9**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-17105190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20106189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-23109193No hitNo description
PfamPF023626.7E-14111190IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391111203IPR003340B3 DNA binding domain
SMARTSM010191.4E-12111203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAIDQPIKKR GRPPGSKNAK SKMEQKMELV HQRLALLDSS SGSDRDDDIG PRMLMPKEVE  60
NEQRTVPGIP QTCNTQNTSN GRTNTTETVC GSAMERAQEI QTKLPAEHPS FVKHMLHSHV  120
VSGFWLGLPA GFCNKYLPKH DTDIVLEDEN GNNHKTTYLG GKQGLSAGWR GFAINHDIKV  180
GDVVVFELVH IIREKNISTT DRAPGLKSFY ACKKRKISKE ATDNATKPKE DPETTRVSSK  240
MAHDDTQNLV HEAIDGIRFS DSEMSFDDMT SYSNFNIVVD GLVIDCKFPD HQRRTYYELC  300
CAQKSFLHRH LLRQLSLTLV VGVIMETINI AEGIRACGAG TSSQEDFLIW KKTLQSFDLL  360
GMNVAFLLKR VDDLLGLPEQ PRDPSECGKY NELKLERSRA GEKVKALESM MLTVKDVLKK  420
IDAEMEEMES SVRNHDIALR KIATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0D3ELG00.0A0A0D3ELG0_9ORYZ; Uncharacterized protein
STRINGOBART01G08400.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]