PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G07940.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 368aa MW: 41835.8 Da PI: 5.6541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G07940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37	8e-12	58	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 +g+WT E +l +++k++G ++Wk++ + g +Rt++++k++w++ OBART01G07940.1 58 KGPWTSLENSILEKYIKKHGERNWKLVQKNTGllrcgksCRRTDNEIKNYWNT 110 79******************************999998878999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.639	53	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-13	54	114	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.48E-10	55	114	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-10	57	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-10	58	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.22E-8	60	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MRGHRSRVRG DGGLRMHRSG SDPDSDRAHW YMSNSDDESF VDKDKDCRRG TVAPLLKKGP 60 WTSLENSILE KYIKKHGERN WKLVQKNTGL LRCGKSCRRT DNEIKNYWNT RIKKCKNNRW 120 LLYPANVCND ALNEDQYGSV DPSVREKLTN NQLEDTTSMY SAPQFSYASI SNILDRRLAS 180 KDYDSIEDQR NRIEIAAEYE ISLPVLKTTN NDIFPSASIF ANHGISNGNL SALSTTDALQ 240 MELPLIQFDP NNQFIYSRDY AMHLTNLALL NDQSEELLNH IDVLNYVVMK EELSGGTHTS 300 MTPSSELVVP RYEGDVPPLQ DDFTPYLYLN GANLSIFEDI KSHCGFENVA NLGVVADSLK 360 LCESESMR

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MRGHRSRVRG DGGLRMHRSG SDPDSDRAHW YMSNSDDESF VDKDKDCRRG TVAPLLKKGP  60
WTSLENSILE KYIKKHGERN WKLVQKNTGL LRCGKSCRRT DNEIKNYWNT RIKKCKNNRW  120
LLYPANVCND ALNEDQYGSV DPSVREKLTN NQLEDTTSMY SAPQFSYASI SNILDRRLAS  180
KDYDSIEDQR NRIEIAAEYE ISLPVLKTTN NDIFPSASIF ANHGISNGNL SALSTTDALQ  240
MELPLIQFDP NNQFIYSRDY AMHLTNLALL NDQSEELLNH IDVLNYVVMK EELSGGTHTS  300
MTPSSELVVP RYEGDVPPLQ DDFTPYLYLN GANLSIFEDI KSHCGFENVA NLGVVADSLK  360
LCESESMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	D88621	0.0	D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881555.1	1e-160	transcription factor GAMYB
TrEMBL	A0A0D3ELA6	0.0	A0A0D3ELA6_9ORYZ; Uncharacterized protein
STRING	OBART01G07940.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15408	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	7e-22	myb domain protein 101