PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G07230.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 577aa    MW: 59926.3 Da    PI: 7.1525
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G07230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.1e-35206306286
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaessss 80 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++++s++ ++s ++
  OBART01G07230.1 206 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSAEN 299
                      79**************************************************************888888888888776555555553333333 PP

              TCP  81 sas.nss 86 
                      s++ ++ 
  OBART01G07230.1 300 SDDqAQA 306
                      3330222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-30206279IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257208266IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSNPWDCVYY GIRRGGWTRI GAATVAAGKK AAGDLDPRHH HHRVTHGGDG GGVGGGSGGQ  60
EEADEQQQQQ HDHHRLLQLH HHQGVQQDQE PPPVPVFHLQ PASVRQLSGS SAEYALLSPM  120
GDAAGHSHHH QHGFQPQLLS FGGVGHHHHL HQFTAQPQPP AASHTRGRGG GGEIVPATTT  180
PRSRGGGGGG GGEIVAVQGG HIVRSTGRKD RHSKVCTARG PRDRRVRLSA HTAIQFYDVQ  240
DRLGYDRPSK AVDWLIKNAK DAIDKLDVLP AWQPTAGGAG AGNAAAPPSS STHPDSAENS  300
DDQAQAITVA HTAFDFAGGG SGGTSFLPPS LDSDAIADTI KSFFPMGGTA GGEASSSTAA  360
AQSSAMGFQS YTPDLLSRTG SQSQELRLSL QSLPDPMFHH QQHRHGGGGG GGNGTTQQAL  420
FSGAANYSFG GGAMWATEQQ AQNQRMLPWN VPDPGGGGGA AYLFNVSQQA AHMQAAAAAL  480
GGHQSQFFFQ RGPLQSSNQP SERGWPETVE ADNQMSHHQG GLSPSVSAAI GFAAPGIGFS  540
GFRLPARIQG DEEHNGGGGG NGDKPPPPSS VSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20213266154Putative transcription factor PCF6
5zkt_B1e-20213266154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718050.0AB071805.1 Oryza sativa Japonica Group mRNA for transcription factor PCF5, complete cds.
GenBankAK2416580.0AK241658.1 Oryza sativa Japonica Group cDNA, clone: J065191F09, full insert sequence.
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634261.10.0transcription factor PCF5
SwissprotQ8LT070.0PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A0D3EL230.0A0A0D3EL23_9ORYZ; Uncharacterized protein
STRINGOBART01G07230.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-54TCP family protein