PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G06430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26839.6 Da PI: 4.5578 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.4e-20 | 102 | 151 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +grW++eIrdp+ + +r++lg+f+ta eAa+a++a +++++g+ OBART01G06430.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151 9*******.**********75....44**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.787 | 101 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-37 | 101 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 102 | 159 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 102 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-12 | 102 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.22E-27 | 104 | 157 | No hit | No description |
PRINTS | PR00367 | 2.6E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD 60 DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP 120 VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD 180 DDGVARGNSP ASSSAPDSAS ACTTSSTVAS GERGDELILL ECCSDDVMDS LLAGFDVSSE 240 PRSVLGMVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-19 | 102 | 158 | 6 | 63 | ATERF1 |
3gcc_A | 9e-19 | 102 | 158 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RPRRRRRVR |
2 | 90 | 97 | RRRRRVRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU429443 | 0.0 | EU429443.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610635.1 | 1e-118 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0D3EKS5 | 1e-179 | A0A0D3EKS5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G06430.1 | 1e-180 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15200 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 3e-19 | ERF family protein |