PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G06400.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 830aa    MW: 89799 Da    PI: 6.5907
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G06400.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OBART01G06400.4 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START58.71.8e-19179275297
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++l
  OBART01G06400.4 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGanGTIEL 271
                      789*******************************************************.8888888888******************9955554 PP

                      EEEX CS
            START  94 mvae 97 
                       +++
  OBART01G06400.4 272 LYMQ 275
                      4433 PP
3START93.93.1e-3030041197204
                      XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
            START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                      +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++
  OBART01G06400.4 300 QLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYE 393
                      789***************************************999999********************************************** PP

                      HHHHHHHHHHHHHTXXXX CS
            START 187 sglaegaktwvatlqrqc 204
                      s+++ ++k+ +a+l++++
  OBART01G06400.4 394 SSAMVAQKISMAALRYLR 411
                      **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000863.68E-161272No hitNo description
PfamPF000462.2E-161270IPR001356Homeobox domain
SuperFamilySSF466898.13E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-181470IPR009057Homeodomain-like
CDDcd146864.04E-664103No hitNo description
PROSITE profilePS5084823.77169413IPR002913START domain
SuperFamilySSF559616.59E-32170266No hitNo description
CDDcd088754.75E-68173412No hitNo description
Gene3DG3DSA:3.30.530.202.2E-17176388IPR023393START-like domain
SMARTSM002342.6E-34178413IPR002913START domain
PfamPF018521.1E-16179275IPR002913START domain
SuperFamilySSF559616.59E-32296392No hitNo description
PfamPF018522.2E-27300411IPR002913START domain
PfamPF086704.2E-49684829IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM  120
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQVAHEDTRS  420
VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVIES DGVDDVCISV NSSKVIGCNA  480
TFSSGLPIVS TGVLCAKASM LLQFLEVIKL GNASNYQDTL VHRDLFLLQM YNGVEESSAG  540
TCSELIFAPI DASFSDDSPL LPSGFRIIPI DSPLDTSSPN CTLDLASTLE AATPRSRISG  600
VNGGGGCAAA AASSSSKAVM TIAFQFAFDG HLQDSVAAMA RQYMRNIISS VQRIAVALSS  660
SRLVPPGAAA AAAQLSPVTP EAATLPRWIC QSYRFHFGAE LIKSVDANSS NESILKAVWH  720
HPSAILCCSL KAMPVFTFAN QSGLDMLETT LVALQDMTPE KVFDDQGRKN LCTELPNIME  780
QGMACMEGGV CVSSVGRAAS YEKAVAWKVV DGDGGGAHCI CFMFINWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
GenBankAK1120910.0AK112091.1 Oryza sativa Japonica Group cDNA clone:002-107-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816436.10.0homeobox-leucine zipper protein HOX29-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0D3EKS10.0A0A0D3EKS1_9ORYZ; Uncharacterized protein
STRINGOBART01G06400.30.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]