PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G03880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 899aa    MW: 98827.9 Da    PI: 8.4425
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G03880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06252269118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C   CH GpCppC
  OBART01G03880.1 252 CGIHRCPVDCHDGPCPPC 269
                      ****************** PP
2zf-NF-X116.51.8e-05359378119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG+HkC + CH+G C + C+
  OBART01G03880.1 359 CGRHKCPERCHRGSCVEtCR 378
                      ***************99997 PP
3zf-NF-X116.51.8e-05412431120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C + C+eG+C pCp+
  OBART01G03880.1 412 CGRHACRRRCCEGDCAPCPE 431
                      ******************96 PP
4zf-NF-X122.32.9e-07439458120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+HkC ++CH+G C pCp+
  OBART01G03880.1 439 CGNHKCLSPCHRGACAPCPL 458
                      ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-698156No hitNo description
PROSITE profilePS500898.91999150IPR001841Zinc finger, RING-type
PROSITE patternPS01359099149IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.02199217IPR000967Zinc finger, NF-X1-type
PfamPF014220.034200216IPR000967Zinc finger, NF-X1-type
CDDcd060087.53E-9242290No hitNo description
PfamPF014225.8E-5252269IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011252271IPR000967Zinc finger, NF-X1-type
CDDcd060082.94E-7295335No hitNo description
PfamPF014220.41305323IPR000967Zinc finger, NF-X1-type
SMARTSM004380.082305324IPR000967Zinc finger, NF-X1-type
CDDcd060085.34E-9349398No hitNo description
PfamPF014220.0033359378IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035359379IPR000967Zinc finger, NF-X1-type
CDDcd060083.98E-9402450No hitNo description
PfamPF014220.004412430IPR000967Zinc finger, NF-X1-type
SMARTSM004380.087412431IPR000967Zinc finger, NF-X1-type
CDDcd060081.44E-10429477No hitNo description
PfamPF014224.8E-5439457IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038439458IPR000967Zinc finger, NF-X1-type
SMARTSM0043825502517IPR000967Zinc finger, NF-X1-type
PfamPF0142236506516IPR000967Zinc finger, NF-X1-type
PfamPF0142288525534IPR000967Zinc finger, NF-X1-type
SMARTSM00438170525570IPR000967Zinc finger, NF-X1-type
PfamPF014220.35607617IPR000967Zinc finger, NF-X1-type
SMARTSM00438200607625IPR000967Zinc finger, NF-X1-type
PfamPF0142212661678IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1661679IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44724745IPR000967Zinc finger, NF-X1-type
PfamPF01422170726738IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPSNPSAV SDSDPSSYSS SGEETDLTAS  60
DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRLSD PVWSCSASCF  120
ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV DPAPDPWILP  180
HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR ETRRCSHQRY  240
SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE RVFQCKRECG  300
GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG STCEKVLGCG  360
RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR NCGRHACRRR  420
CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF FEVPCGTEKN  480
QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK LRCHGPIAPP  540
NPEFTLKPIK RKKEKHIDST PGTPCPPCQE VVLVPCFGQH LGQERAILCS KRRQFPCQNL  600
CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ LAILSLASAS AFAEPCEECN LPCQRVREPP  660
CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV RSCGGPCHRK  720
LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR QSGRDPKQIP  780
KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKK RNRGQESVES  840
SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR QRHLKPGRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D3EJU80.0A0A0D3EJU8_9ORYZ; Uncharacterized protein
STRINGOBART01G03880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors