PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G02710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 281aa    MW: 30967.6 Da    PI: 10.0787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G02710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-091560347
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     +W++eE +++ +a + l  +  +W+++ar ++ gR++ ++ ++++++
  OBART01G02710.1 15 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 60
                     8*****************99************.***********976 PP
2Myb_DNA-binding48.22.4e-15128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OBART01G02710.1 128 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 172
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-51263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-51459IPR009057Homeodomain-like
SuperFamilySSF466892.77E-81568IPR009057Homeodomain-like
PROSITE profilePS500906.2841561IPR017877Myb-like domain
PfamPF002493.5E-81560IPR001005SANT/Myb domain
CDDcd001671.16E-71560No hitNo description
PROSITE profilePS5129418.359121177IPR017930Myb domain
SuperFamilySSF466896.28E-18122177IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17124175IPR006447Myb domain, plants
SMARTSM007173.4E-13125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12125171IPR009057Homeodomain-like
CDDcd001677.39E-12128173No hitNo description
PfamPF002499.2E-13128172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDHYASRGNW FMARKWSPEE NKQFERALAG LDLRCPDWDR VARAIPGRSA LEVMNHFRDL  60
ELDVQQIENG MVPFPVYGAA AAGGAFTLQW DGAHGVGDFR NAYRFGGGGG GKRHFGRTPE  120
QERKKGVPWT EEEHKLFLLG LKKYGKGDWR NISRNFVQTR TPTQVASHAQ KYFIRLNSGG  180
KDKRRSSIHD ITTVNLTDDR PPSPSQSSLI SNQSNTSTLT AAVAPFSSTA DVKPQNAANA  240
SFNSPSRTLG MAGYGMGLQD QGLQCGGPLH DQLAASRSIL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-13577373RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679640.0AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence.
GenBankEU8372500.0EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621817.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9Y3380.0A0A0D9Y338_9ORYZ; Uncharacterized protein
STRINGOGLUM01G02990.10.0(Oryza glumipatula)
STRINGOS01T0142500-010.0(Oryza sativa)
STRINGOBART01G02710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]