PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G02050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 338aa    MW: 36528.6 Da    PI: 4.5185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G02050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-13114157149
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                      ++y+GVr +k +g+W+AeIr  +     +  r +lg+f+ta+ A +a+ + 
  OBART01G02050.1 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 157
                      68******99.**********55.....45999*******55555555.43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-8114156IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-14115164IPR016177DNA-binding domain
SMARTSM003804.4E-14115169IPR001471AP2/ERF domain
PROSITE profilePS5103217.148115174IPR001471AP2/ERF domain
PRINTSPR003674.6E-8116127IPR001471AP2/ERF domain
CDDcd000181.99E-14116147No hitNo description
Gene3DG3DSA:3.30.730.101.4E-18116166IPR001471AP2/ERF domain
PRINTSPR003674.6E-8138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSAAFSRPHV PSAAASLQPS RRVRVVFEDP  60
DATDSDSDDD EDAGAASKKR YFELFIGKPA SSTKQASPAS TVAAYANIGK VGSTCYRGVR  120
LRKWGKWAAE IRNPFTGHRE WLGTFDTADA ASAAYQSASR NFAEEKRRRG VASSASPASS  180
ATPTPTASSS SSTSAAPFAH PSPSSVLEAT KPAPKPESPP LPEQAATPLL VEATNETAEL  240
PDDPEFYKDI LRGLQLPDID PMDFRAGLDA LDISDVPAYM NGEQDVLFTE DMLLGDFAEE  300
DDLDLDDIGD DFCEDFPEIP SGYDFGRGDM FRQVDFCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196450.0AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence.
GenBankAP0025260.0AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418280.0AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds.
GenBankEU8372590.0EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds.
GenBankKC9883300.0KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616539.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3EJ880.0A0A0D3EJ88_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MQZ00.0A0A0E0MQZ0_ORYRU; Uncharacterized protein
TrEMBLI1NJY50.0I1NJY5_ORYGL; Uncharacterized protein
TrEMBLQ9LGB60.0Q9LGB6_ORYSJ; AP2 domain containing protein
TrEMBLR9TI300.0R9TI30_ORYSA; AP2 transcription factor
STRINGORUFI01G02130.10.0(Oryza rufipogon)
STRINGORGLA01G0017500.10.0(Oryza glaberrima)
STRINGOBART01G02050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.38e-12related to AP2 2