PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G00330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27670.6 Da PI: 4.8412 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.8 | 4.9e-24 | 23 | 95 | 1 | 72 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk 72 lppGfrFhPtdeel+ +yL k++++ ++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g OBART01G00330.1 23 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGL 95 79***************************9.89***************5334455666*************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-29 | 17 | 106 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.603 | 23 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-11 | 24 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTIDLQLPAA ACGDHHTAAG AGLPPGFRFH PTDEELLLHY LGKRAAAAPC PAPVIAEVDI 60 YKYNPWELPA MAVFGESDGE WYFFSPRDRK YPNGLDEWVL CRIYKKKEAN QQLQHYIDMM 120 MDDDNDDEHN LQVQQQAQSH RMPRPPSISD YLLDYSDDLP PSTDQTPSLH LGFTAVNEGN 180 NNNNKRHKTM EEYYSISIST AEMLHASSST SNNKSTRINF SSIFEPQTPA AAGHQLMSSH 240 NDDTSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-29 | 23 | 94 | 15 | 84 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621004.1 | 1e-73 | NAC transcription factor 29 | ||||
TrEMBL | A0A0D3EIN2 | 0.0 | A0A0D3EIN2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G00330.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 5e-31 | NAC family protein |