PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631883.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 278aa    MW: 31827.7 Da    PI: 6.5098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT +Ed +l++++ +lG g+W++ a+  g++Rt+k+c++rw +yl
   XP_009631883.1 21 KGGWTLDEDSKLIHYISLLGQGRWDSLAHFAGLKRTGKSCRLRWMNYL 68
                     688*******************************************97 PP
2Myb_DNA-binding46.58.3e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  T++E++l++ ++ ++G++ W++Ia++++ gRt++++k++w++
   XP_009631883.1  74 RGELTPQEQLLILLLHFRYGNR-WAKIAEHLP-GRTDNEVKNYWRT 117
                      7888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8721668IPR017930Myb domain
SuperFamilySSF466897.35E-2819115IPR009057Homeodomain-like
SMARTSM007174.3E-132070IPR001005SANT/Myb domain
PfamPF002491.9E-142168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-192375IPR009057Homeodomain-like
CDDcd001671.67E-102468No hitNo description
PROSITE profilePS5129420.67769123IPR017930Myb domain
SMARTSM007174.3E-1473121IPR001005SANT/Myb domain
PfamPF002494.9E-1474117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2176121IPR009057Homeodomain-like
CDDcd001679.25E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEEEKATERL YSAQEKVKMT KGGWTLDEDS KLIHYISLLG QGRWDSLAHF AGLKRTGKSC  60
RLRWMNYLRP NLRRGELTPQ EQLLILLLHF RYGNRWAKIA EHLPGRTDNE VKNYWRTKVQ  120
KHAKQLHCDV NSLQFRDFLH YQWLPRLTEQ IRATSSSQEQ LMSSSSSFTS HNNTEVLILE  180
NSTFLQTGIN GSTNITCPIN HTPNVAEVTS LIDDSIWNLS SGNRTSGFED GFSDLSSTDM  240
AVYSNSQDQC HSWASAGSEV LLPDETLGLN DMDLWLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241912125126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631883.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB49e-70MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S4CTP60.0A0A1S4CTP6_TOBAC; transcription factor MYB108-like
STRINGXP_009631883.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-64myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]