PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631863.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 502aa    MW: 57130 Da    PI: 9.4031
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-24119219299
                     EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      k+ltpsdv+++g l++pk+ a+e+       +  +   ++l+ +d++g +W++++ yr++s+r+++++GW++Fv+a++L +gD+++F   + ++
  XP_009631863.1 119 SKKLTPSDVNTHGGLSIPKQLADECfpplnndQDFP--AQDLVAKDLNGLEWKFRHVYRGQSRRHLISNGWSRFVSAKKLVAGDTLIFV--RGKN 209
                     599************************998653333..348************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      el+v v+r+
  XP_009631863.1 210 YELYVAVRRA 219
                     999**99986 PP
2Auxin_resp85.11.4e-28244331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+s++++F+++Y+P+++++ F++++++++ka ++ + vGm f m fe+ +    r+     sGt+v+v+d+dp+rWp+S Wr+Lk
  XP_009631863.1 244 AYHAVSSGTMFTIYYRPWTCPAAFIIPYNQYMKASEIDYEVGMTFNMPFESHELDCGRTvcpifSGTIVDVKDFDPIRWPGSDWRCLK 331
                     689************************************************98876654457789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-29109231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-37111232IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-22118218No hitNo description
PROSITE profilePS5086314.015118220IPR003340B3 DNA binding domain
SMARTSM010193.3E-22118220IPR003340B3 DNA binding domain
PfamPF023621.5E-21119219IPR003340B3 DNA binding domain
PfamPF065071.0E-25244331IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGNDDKGRNS GLHRELWLAC SGPLVIVPSS GDMVFYYPQG HIEQIEACMN EDGLMPMPAY  60
NVPYKILCRV VSVRLQAESN TDEVFAEITL LPHLGTREPI LAERSPLFSR AKSDVHTYSK  120
KLTPSDVNTH GGLSIPKQLA DECFPPLNND QDFPAQDLVA KDLNGLEWKF RHVYRGQSRR  180
HLISNGWSRF VSAKKLVAGD TLIFVRGKNY ELYVAVRRAK KQQTSSSTSI LSSHYMQHGM  240
LSNAYHAVSS GTMFTIYYRP WTCPAAFIIP YNQYMKASEI DYEVGMTFNM PFESHELDCG  300
RTVCPIFSGT IVDVKDFDPI RWPGSDWRCL KVKWNHAKLM PVRPERVSPW SIVAIGITKR  360
KRRSFSSYPS KAQPLDPANP FGVKDCLMKS SVEHSPPWNS RVLQGQEKAV NAYEENAFRR  420
PHDLRQPPQR KLRWRRGQVR LENQQHNHIL DPWLDFIGKE VHGTSPSSNG FSNLQSSKIP  480
SFASESLSIP KIVDYRNSNS KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-115935216352Auxin response factor 1
4ldw_A1e-115935216352Auxin response factor 1
4ldw_B1e-115935216352Auxin response factor 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3402581e-168DQ340258.1 Nicotiana tabacum ARF2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631858.10.0PREDICTED: auxin response factor 2-like isoform X1
TrEMBLA0A1S3XP510.0A0A1S3XP51_TOBAC; Auxin response factor
STRINGXP_009631858.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-127auxin response factor 2